| ambigs.awk | Add ambiguity codes to codons. |
| blather2.awk | Fill out a genetic code with nucleotide abiguity codes. |
| fasta2seq.awk | Extract the sequences in a fasta file. |
| firstcmnt.awk | Extracts the first comment in program source. |
| firstsentence.awk | Extracts the first sentence in a text. |
| makegcs.awk | Extract genetic codes from a web page like the ones found on NCBI. |
| revcomp.awk | Return the reverse complement of a sequence of bases. |
| seq2fasta.awk | Convert raw sequences to fasta format. |
| translate.awk | Translate from RNA to sequences of amino acids and stop codons. |
| transposetxt.awk | Transpose text as if it were a matrix of characters. |
| allcodons.c | Print a list of all possible codons using IUPAC standard nucleotide codes. |
| complement.c | Convert base codes into their complements. |
| eprintf.c | Print error messages. |
| fastac.c | Converts a fasta file into a compressed code for DNA. |
| markov.c | Markov Chain Random Sequence Generator |
| wrap.c | Wrap a stream of characters into even lines. |
| wrapFasta.c | Wrap a fasta format file at 60 characters. |
| complement.sh | Complement of nucleotide sequences including ambiguity codes. |
| revcomp.sh | Reverse complement of nucleotide sequences including ambiguity codes. |
| revcompfa.sh | Reverse complement all the sequences in a fasta file. |
| longorfs.pl | Print the longest open reading frame in each line. |
| orfs.pl | Print open reading frames. |
| pepfa2seq.pl | Converts peptide sequences in fasta format to single strings. |
| Codes.html | Codes |
| GeneticCodes.html | Genetic Codes |
| SequenceMarkup.html | Biological Sequence Markup - Blossom Associates West |
| centralDogma.py | DNA -> RNA -> Protein |
| orfs.py | Find ORFs in DNA. |
| orfsnext.py | Find ORFs in DNA. |
| standard.genetic.code | |
| vertebrate.mitochondrial.code | |
| IGB | Integrated Genome Browser |
| siRNA | Small Interfering RNA |